VI: format your custom database by replace function

By Haktan Suren
In Blog
Oct 3rd, 2012
0 Comments
1468 Views

Couple days ago, I used nucleotide seqs from JGI website and had to create my own blast database. Before I do that, I had to get rid of some of the extra defline info that makes sense only for JGI. I did it with VIM editor

Usage:

%s/search_pattern/replace_pattern/g

Example:

%s/jgi|Poptr1_1|[0-9]*//g

Enjoy!

About the Author

Haktan Suren
- Webguru, Programmer, Web developer, and Father :)

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