Bioinformatics

By Haktan Suren
11 Comments
Dec 6th, 2015
First of all, I highly recommend checking my other post if you are getting package ‘xxx’ is not available (for R version x.y.z)” warning. Y...
By Haktan Suren
43 Comments
Dec 6th, 2015
The default version of `install.packages` somehow stopped working for me on latest version of R. In fact this is regardless of the version of R. I reme...
By Haktan Suren
0 Comments
Oct 3rd, 2012
Building a BLAST database with local sequences has never been this easy. Follow the instructions below and create your own searchable BLAST db in secon...
By Haktan Suren
2 Comments
Oct 3rd, 2012
if you need only one best hit for each query, use -num_alignments and -num_descriptions flag as fallows. Usage: Example: Output: Enjoy!...
By Haktan Suren
4 Comments
Oct 3rd, 2012
I ll list two useful commands of this function. 1-) Get a brief summary about the BLAST database Usage: Example: Output: 2-) Get sequence(s) of a given...
By Haktan Suren
0 Comments
Oct 3rd, 2012
This function helps to create your own searchable (blastable) blast database from the FASTA file. Arguments for the program: -i: Fasta file -p: T or F ...